Publications | Yuyan Ge

^* Corresponding author

2026

Assessment of Cardiac Age From Echocardiography Using Deep Learning

Yuyan Ge, Hamed Tavolinejad, Mateo Sarmiento Bustamante, Benjamin Haeffele, René Vidal, and Julio Chirinos^*

In North American Artery (NAA) Annual Conference, 2026

Oral Abstract

@inproceedings{ge2026cardiacage,
  title = {Assessment of Cardiac Age From Echocardiography Using Deep Learning},
  author = {Ge, Yuyan and Tavolinejad, Hamed and Sarmiento Bustamante, Mateo and Haeffele, Benjamin and Vidal, Ren{\'e} and Chirinos, Julio},
  booktitle = {North American Artery (NAA) Annual Conference},
  year = {2026},
}

BrainParc: Unified Lifespan Brain Parcellation from Structural MR Images

Jiameng Liu, Feihong Liu, Kaicong Sun, Zhiming Cui, Tianyang Sun, Zehong Cao, Jiawei Huang, Shuwei Bai, Yulin Wang, Yulong Dou, Kaicheng Zhang, Caiwen Jiang, Yuyan Ge, Han Zhang, Feng Shi^*, and Dinggang Shen^*

Nature Computational Science, 2026

Bib Paper DOI Code

@article{liu2026brainparc,
  title = {{BrainParc}: Unified Lifespan Brain Parcellation from Structural {MR} Images},
  author = {Liu, Jiameng and Liu, Feihong and Sun, Kaicong and Cui, Zhiming and Sun, Tianyang and Cao, Zehong and Huang, Jiawei and Bai, Shuwei and Wang, Yulin and Dou, Yulong and Zhang, Kaicheng and Jiang, Caiwen and Ge, Yuyan and Zhang, Han and Shi, Feng and Shen, Dinggang},
  journal = {Nature Computational Science},
  year = {2026},
  doi = {10.1038/s43588-026-00963-5},
}

SonoYOLO + MedSAM2: A Pipeline for Automatic Detection and Segmentation of Regions of Interest in Cardiac Ultrasound Videos

Iraj Shroff, Yuyan Ge^*, and René Vidal^*

In IEEE International Symposium on Biomedical Imaging (ISBI), 2026

Bib Code

@inproceedings{shroff2026sonoyolo,
  title = {{SonoYOLO + MedSAM2}: A Pipeline for Automatic Detection and Segmentation of Regions of Interest in Cardiac Ultrasound Videos},
  author = {Shroff, Iraj and Ge, Yuyan and Vidal, Ren{\'e}},
  booktitle = {IEEE International Symposium on Biomedical Imaging (ISBI)},
  year = {2026},
}

2025

Conformal Information Pursuit for Interactively Guiding Large Language Models

Kwan Ho Ryan Chan^*, Yuyan Ge, Edgar Dobriban, Hamed Hassani, and René Vidal

In Advances in Neural Information Processing Systems (NeurIPS), 2025

Bib Paper arXiv PDF Code Project Poster

@inproceedings{chan2025conformal,
  title = {Conformal Information Pursuit for Interactively Guiding Large Language Models},
  author = {Chan, Kwan Ho Ryan and Ge, Yuyan and Dobriban, Edgar and Hassani, Hamed and Vidal, Ren{\'e}},
  booktitle = {Advances in Neural Information Processing Systems (NeurIPS)},
  year = {2025},
}

IP-CRR: Information Pursuit for Interpretable Classification of Chest Radiology Reports

Yuyan Ge^*, Kwan Ho Ryan Chan, Pablo Messina, and René Vidal

In Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2025

Bib Paper arXiv PDF Code Poster

@inproceedings{ge2025ipcrr,
  title = {{IP-CRR}: Information Pursuit for Interpretable Classification of Chest Radiology Reports},
  author = {Ge, Yuyan and Chan, Kwan Ho Ryan and Messina, Pablo and Vidal, Ren{\'e}},
  booktitle = {Medical Image Computing and Computer-Assisted Intervention (MICCAI)},
  year = {2025},
}

CXR-LT 2024: A MICCAI Challenge on Long-Tailed, Multi-Label, and Zero-Shot Disease Classification from Chest X-ray

Mingquan Lin, Gregory Holste, Song Wang, Yiliang Zhou, Yishu Wei, Imon Banerjee, Pengyi Chen, Tianjie Dai, Yuexi Du, Nicha C. Dvornek, Yuyan Ge, Zuwei Guo, Shouhei Hanaoka, Dongkyun Kim, Pablo Messina, Yang Lu, Denis Parra, Donghyun Son, Álvaro Soto, Aisha Urooj, René Vidal, Yosuke Yamagishi, Pingkun Yan, Zefan Yang, Ruichi Zhang, Yang Zhou, Leo Anthony Celi, Ronald M. Summers, Zhiyong Lu, Hao Chen, Adam E. Flanders, George Shih, Zhangyang Wang^*, and Yifan Peng^*

Medical Image Analysis, 2025

Includes our 1st-place zero-shot classification entry

Bib Paper arXiv DOI

@article{lin2025cxrlt,
  title = {{CXR-LT} 2024: A {MICCAI} Challenge on Long-Tailed, Multi-Label, and Zero-Shot Disease Classification from Chest {X}-ray},
  author = {Lin, Mingquan and Holste, Gregory and Wang, Song and Zhou, Yiliang and Wei, Yishu and Banerjee, Imon and Chen, Pengyi and Dai, Tianjie and Du, Yuexi and Dvornek, Nicha C. and Ge, Yuyan and Guo, Zuwei and Hanaoka, Shouhei and Kim, Dongkyun and Messina, Pablo and Lu, Yang and Parra, Denis and Son, Donghyun and Soto, {\'A}lvaro and Urooj, Aisha and Vidal, Ren{\'e} and Yamagishi, Yosuke and Yan, Pingkun and Yang, Zefan and Zhang, Ruichi and Zhou, Yang and Celi, Leo Anthony and Summers, Ronald M. and Lu, Zhiyong and Chen, Hao and Flanders, Adam E. and Shih, George and Wang, Zhangyang and Peng, Yifan},
  journal = {Medical Image Analysis},
  volume = {106},
  pages = {103739},
  year = {2025},
  doi = {10.1016/j.media.2025.103739},
}

2024

Zero-Shot Chest X-Ray Classification via Visual-Language Models

Yuyan Ge and René Vidal^*

2024

Oral presentation; 1st place in MICCAI 2024 Challenge: CXR-LT

Bib Code

@misc{ge2024zeroshot,
  title = {Zero-Shot Chest {X}-Ray Classification via Visual-Language Models},
  author = {Ge, Yuyan and Vidal, Ren{\'e}},
  booktitle = {MICCAI Challenge: CXR-LT},
  year = {2024},
}

Uncertainty-Aware Refinement Framework for Ovarian Tumor Segmentation in CECT Volume

Jiaqi Hu, Zhiming Cui, Xiao Zhang, Jiadong Zhang, Yuyan Ge, Honghe Zhang, Yan Lu^*, and Dinggang Shen^*

Medical Physics, 2024

Bib Paper DOI

@article{hu2024uncertainty,
  title = {Uncertainty-Aware Refinement Framework for Ovarian Tumor Segmentation in {CECT} Volume},
  author = {Hu, Jiaqi and Cui, Zhiming and Zhang, Xiao and Zhang, Jiadong and Ge, Yuyan and Zhang, Honghe and Lu, Yan and Shen, Dinggang},
  journal = {Medical Physics},
  volume = {51},
  number = {4},
  pages = {2678--2694},
  year = {2024},
  doi = {10.1002/mp.16795},
}

2023

Adult-like Phase and Multi-scale Assistance for Isointense Infant Brain Tissue Segmentation

Jiameng Liu, Feihong Liu, Kaicong Sun, Mianxin Liu, Yuhang Sun, Yuyan Ge, and Dinggang Shen^*

In Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2023

Bib Paper PDF

@inproceedings{liu2023adult,
  title = {Adult-like Phase and Multi-scale Assistance for Isointense Infant Brain Tissue Segmentation},
  author = {Liu, Jiameng and Liu, Feihong and Sun, Kaicong and Liu, Mianxin and Sun, Yuhang and Ge, Yuyan and Shen, Dinggang},
  booktitle = {Medical Image Computing and Computer-Assisted Intervention (MICCAI)},
  pages = {56--66},
  year = {2023},
}

Coarse-to-Fine Feature Representation Based on Deformable Partition Attention for Melanoma Identification

Dong Zhang, Jing Yang, Shaoyi Du^*, Hongcheng Han, Yuyan Ge, Longfei Zhu, Ce Li, Meifeng Xu^*, and Nanning Zheng

Pattern Recognition, 2023

Bib Paper DOI

@article{zhang2023coarse,
  title = {Coarse-to-Fine Feature Representation Based on Deformable Partition Attention for Melanoma Identification},
  author = {Zhang, Dong and Yang, Jing and Du, Shaoyi and Han, Hongcheng and Ge, Yuyan and Zhu, Longfei and Li, Ce and Xu, Meifeng and Zheng, Nanning},
  journal = {Pattern Recognition},
  volume = {136},
  pages = {109247},
  year = {2023},
  doi = {10.1016/j.patcog.2022.109247},
}

2022

Multi-Scale and Focal Region Based Deep Learning Network for Fine Brain Parcellation

Yuyan Ge, Zhenyu Tang, Lei Ma, Caiwen Jiang, Feng Shi, Shaoyi Du^*, and Dinggang Shen^*

In MICCAI Workshop on Machine Learning in Medical Imaging (MLMI), 2022

Oral presentation

Bib Paper PDF

@inproceedings{ge2022multi,
  title = {Multi-Scale and Focal Region Based Deep Learning Network for Fine Brain Parcellation},
  author = {Ge, Yuyan and Tang, Zhenyu and Ma, Lei and Jiang, Caiwen and Shi, Feng and Du, Shaoyi and Shen, Dinggang},
  booktitle = {MICCAI Workshop on Machine Learning in Medical Imaging (MLMI)},
  pages = {466--475},
  year = {2022},
}

With or Without Human Interference for Precise Age Estimation Based on Machine Learning?

Mengqi Han, Shaoyi Du^*, Yuyan Ge, Dong Zhang, Yuting Chi, Hong Long, Jing Yang, Yang Yang, Jingmin Xin, Teng Chen, Nanning Zheng, and Yucheng Guo^*

International Journal of Legal Medicine, 2022

Bib Paper DOI

@article{han2022or,
  title = {With or Without Human Interference for Precise Age Estimation Based on Machine Learning?},
  author = {Han, Mengqi and Du, Shaoyi and Ge, Yuyan and Zhang, Dong and Chi, Yuting and Long, Hong and Yang, Jing and Yang, Yang and Xin, Jingmin and Chen, Teng and Zheng, Nanning and Guo, Yucheng},
  journal = {International Journal of Legal Medicine},
  volume = {136},
  number = {3},
  pages = {821--831},
  year = {2022},
  doi = {10.1007/s00414-022-02796-z},
}

2021

RGB-D Point Cloud Registration Based on Salient Object Detection

Teng Wan, Shaoyi Du^*, Wenting Cui, Runzhao Yao, Yuyan Ge, Ce Li, Yue Gao, and Nanning Zheng

IEEE Transactions on Neural Networks and Learning Systems, 2021

Bib Paper DOI

@article{wan2021rgb,
  title = {{RGB-D} Point Cloud Registration Based on Salient Object Detection},
  author = {Wan, Teng and Du, Shaoyi and Cui, Wenting and Yao, Runzhao and Ge, Yuyan and Li, Ce and Gao, Yue and Zheng, Nanning},
  journal = {IEEE Transactions on Neural Networks and Learning Systems},
  volume = {33},
  number = {8},
  pages = {3547--3559},
  year = {2021},
  doi = {10.1109/TNNLS.2021.3053274},
}

2020

Evaluation of Orthodontic Treatment Based on the Registration of X-ray Image Features

Yuyan Ge, Shaoyi Du^*, Wenting Cui, Runzhao Yao, Jiamin Zhao, Mengqi Han, and Yucheng Guo

In Chinese Automation Congress (CAC), 2020

Bib Paper PDF DOI

@inproceedings{ge2020evaluation,
  title = {Evaluation of Orthodontic Treatment Based on the Registration of {X}-ray Image Features},
  author = {Ge, Yuyan and Du, Shaoyi and Cui, Wenting and Yao, Runzhao and Zhao, Jiamin and Han, Mengqi and Guo, Yucheng},
  booktitle = {Chinese Automation Congress (CAC)},
  pages = {4383--4387},
  year = {2020},
  doi = {10.1109/CAC51589.2020.9327422},
}